National Oceanic and
Atmospheric Administration
United States Department of Commerce

Dr. Kim Andrews

Research Scientist
Staff Affiliation: 
UW/JISAO
PMEL Division: 
Ocean Environment

Dr. Kim Andrews explores questions about how environmental variation influences marine biological diversity over space and time, both within species and across communities of species. She uses cutting edge techniques that rely on high-throughput DNA sequencing technologies, such as metabarcoding, RADseq, and multiplex PCR amplicon sequencing. Metabarcoding provides a way to identify the species present in marine communities using plankton samples and environmental DNA (eDNA) water or sediment samples, with much less time and expense than morphology-based techniques such as picking and sorting from plankton or trawl samples. RADseq and amplicon sequencing enable high-resolution characterization of population structure and genetic diversity, and provide insight into how species adapt to different environments at the genomic level. Information from this work helps us understand how individual species and entire ecosystems will respond to environmental change and fishing pressure.

Publications

Andrews KR, M De Barba, MA Russello, LP Waits. In press. Techniques for using non-invasive, archival, and environmental samples in population genomic studies. In: PA Hohenlohe, OP Rajora (ed.) Population Genomics: Wildlife, Springer Nature

Andrews KR, JR Adams, EF Cassirer, RK Plowright, C Gardner, M Dwire, PA Hohenlohe, LP Waits. 2018. A bioinformatic pipeline for identifying informative SNP panels for parentage assignment from RADseq data. Molecular Ecology Resources. DOI:10.1111/1755-0998.12910

Hohenlohe PA, BK Hand, KR Andrews, G Luikart. 2018. Population genomic insights in ecology and evolution. In: OP Rajora (ed.) Population Genomics Concepts and Approaches, Springer Nature. DOI: 10.1007/13836_2018_20

Plowright RK, K Manlove, TE Besser, DJ Paez, KR Andrews, PE Matthews, L Waits, PJ Hudson, EF Cassirer. 2017. Age-specific infectious period shapes dynamics of pneumonia in bighorn sheep. Ecology Letters. 20(10):1325-1336. DOI: 10.1111/ele.12829.

Catchen J, PA Hohenlohe, L Bernatchez, WC Funk, KR Andrews, F Allendorf. 2017. Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations. Molecular Ecology Resources. 17(3): 362-365. DOI:10.1111/1755-0998.12669

Hohenlohe PA, LY Rutledge, LP Waits, KR Andrews, JR Adams, JW Hinton, RM Nowak, BR Patterson, AP Wydeven, PA Wilson, BN White. 2017. Whole-genome data do not support recent hybrid origins of red wolves and eastern wolves. Science Advances. 2(7) DOI: 10.1126/sciadv.1501714.

BW Bowen, MR Gaither, JD DiBattista, M Iacchei, KR Andrews, WS Grant, RJ Toonen, JC Briggs. 2017. Comparative Phylogeography of the Ocean Planet. Pp. 5-21 In: Avise JC, Bowen BW, Ayala FJ. (eds)  In the light of evolution, Volume X: Comparative phylogeography, National Academies Press, Washington D.C.

KM Cammen, KR Andrews, EL Carroll, AD Foote, E Humble, JI Khudyakov, M Louis, MR McGowen, MT Olsen, AM VanCise. 2016. Genomic methods take the plunge: recent advances in high-throughput sequencing of marine mammals. Journal of Heredity 107(6):481-495. DOI:10.1093/jhered/esw044 (Invited Review)

BW Bowen, MR Gaither, JD DiBattista, M Iacchei, KR Andrews, WS Grant, RJ Toonen, JC Briggs. 2016. Comparative Phylogeography of the Ocean Planet. Proceedings of the National Academy of Sciences 113(29):7962-7969. DOI: 10.1073/pnas.1602404113.

Andrews KR, A Williams, I Fernandez-Silva, S Newman, J Copus, J Randall, BW Bowen. 2016. Phylogeny of deepwater snappers (Genus Etelis) reveals a cryptic species pair in the Indo-Pacific and Pleistocene invasion of the Atlantic. Molecular Phylogenetics & Evolution 100:361-371. DOI:10.1016/j.ympev.2016.04.004.

Andrews KR, JM Good, MR Miller, G Luikart, PA Hohenlohe. 2016. Harnessing the power of RADseq for ecological and evolutionary genomics. Nature Reviews Genetics 17(81-92). DOI:10.1038/nrg.2015.28.

Selkoe KA, OE Gaggiotti, EA Treml, JLK Wren, MK Donovan, Hawai‘i Reef Connectivity Consortium, RJ Toonen. 2016. The DNA of coral reef biodiversity: predicting and protecting genetic diversity of reef assemblages. Proceedings of the Royal Society Series B (283):20160354. DOI:10.1098/rspb.2016.0354.

Goetze E, KR Andrews, KTCA Peijnenburg, E Portner, E Norton. 2015. Temporal stability of genetic structure in a mesopelagic copepod. PLoS ONE 10(8):e0136087.doi:10.1371/ journal.pone.0136087.

Andrews KR, E Norton, I Fernandez-Silva, E Portner, E Goetze. 2014. Multilocus evidence for globally-distributed cryptic species and distinct populations across ocean gyres in a mesopelagic copepod. Molecular Ecology 23(22):5462-79. DOI: 10.1111/mec.12950.

Andrews KR, PA Hohenlohe, MR Miller, B Hand, JE Seeb, G Luikart. 2014. Trade-offs and utility of alternative RADseq methods: Reply to Puritz et al. 2014. Molecular Ecology 23:5943-5946. DOI: 10.1111/mec.12964

Andrews KR, G Luikart. 2014. Recent novel approaches for population genomics data analysis. Molecular Ecology 23:1661-1667. DOI: 10.1111/mec.12686.

Andrews KR, V Moriwake, C Wilcox, EG Grau, C Kelley, RL Pyle, BW Bowen. 2014. Phylogeographic analyses of submesophotic snappers Etelis coruscans and Etelis "marshi" (Family Lutjanidae) reveal concordant genetic structure across the Hawaiian Archipelago. PLoS ONE 9(4)e91665. DOI: 10.1371/journal.pone.0091665.

Selkoe AS, OE Gaggiotti, KR Andrews, MA Bernal, C Bird, H Bolick, I Baums, R Coleman, GT Concepcion, MT Craig, JD DiBattista, J Eble, I Fernandez-Silva, MR Gaither, M Iacchei, NR Polato, MAJ Rivera LA Rocha, D Skillings, M Timmers, Z Szabo, BW Bowen, RJ Toonen. 2014. Emergent patterns of population genetic structure for a coral reef community. Molecular Ecology 23:3064-3079. DOI:10.1111/mec.12804.

Andrews KR, WF Perrin, M Oremusk, L Karczmarski, BW Bowen, JB Puritz, RJ Toonen. 2013. The evolving male: spinner dolphin (Stenella longirostris) ecotypes are divergent at Y chromosome but not mtDNA or autosomal markers. Molecular Ecology 22(9):2408-23. DOI: 10.1111/mec.12193.

Andrews K 2013. Population Genetics in the Conservation of Primates and Cetaceans. In: L. Karczmarski & J. Yamagiwa (eds.) Primates and Cetaceans: Field Studies and Conservation of Complex Mammalian Societies, pp 289-308, Springer Japan.

Toonen RJ, JB Puritz, ZH Forsman, JL Whitney, I Fernandez-Silva, KR Andrews, CE Bird. 2013. ezRAD: A simplified method for genomic genotyping in non-model organisms. PeerJ. 1:e203; DOI: 10.7717/peerj.203.

Fernandez-Silva I, J Whitney, B Wainwright, KR Andrews, H Ylitalo-Ward, BW Bowen, RJ Toonen, E Goetze, SA Karl. 2013. Microsatellites for next-generation ecologists: a post-sequencing bioinformatics pipeline. PLoS ONE 8(2): e55990. DOI:10.1371/journal.pone.0055990

Toonen RJ, KR Andrews, IB Baums, CE Bird, GT Concepcion, TS Daly-Engel, JA Eble, A Faucci, MR Gaither, M Iacchei, JB Puritz, JK Schultz, DJ Skillings, M Timmers, BW Bowen. 2011. Defining boundaries for ecosystem-based management: A multispecies case study of marine connectivity across the Hawaiian Archipelago. Journal of Marine Biology 2011: Article ID 460173. DOI:10.1155/2011/460173.

MAJ Rivera*, KR Andrews*, D Kobayashi, J Wren, C Kelley, GK Roderick, RJ Toonen. 2011. Genetic analyses and simulations of larval dispersal reveal distinct populations and directional connectivity across the range of the Hawaiian Grouper (Epinephelus quernus). Journal of Marine Biology 2011: Article ID 765353. DOI:10.1155/2011/765353. *Equal contribution

Timmers MA, RJ Toonen, KR Andrews, C Bird, MJ deMaintenon, RE Brainard. 2011. Widespread dispersal of the crown-of-thorns sea star, Acanthaster planci, across the Hawaiian Archipelago and Johnston Atoll. Journal of Marine Biology 2011: Article ID 934269.

Andrews KR, L Karczmarski, WWL Au, SH Rickards, CAVanderlip, BW Bowen, E Gordon Grau, RJ Toonen.  2010.  Rolling stones and stable homes: Social structure, habitat diversity, and population genetics of the Hawaiian spinner dolphin (Stenella longirostris). Molecular Ecology 19:732-748. DOI:10.1155/2011/934269.

Johnston DW, J Robbins, ME Chapla, D K Mattila, KR Andrews. 2008. Diversity, habitat associations and stock structure of odontocete cetaceans in the waters of American Samoa, 2003-06. Journal of Cetacean Research and Management 10:59-66.

Andrews KR, L Karczmarski, WWL Au, SH Rickards, CA Vanderlip, RJ Toonen. 2006. Patterns of genetic diversity of the Hawaiian spinner dolphin (Stenella longirostris). Atoll Research Bulletin No. 543:65-73.

Au WWL, AA Pack, MO Lammers, LM Herman, MH Deakos, K Andrews. 2006. Acoustic properties of humpback whale songs. Journal of the Acoustical Society of America 120:1103-1110. DOI:10.1121/1.2211547.

Nachtigall PE, WWL Au, JL Pawloski, K Andrews, and CW Oliver. 2000. Measurements of the low frequency components of active and passive sounds produced by dolphins. Aquatic Mammals 26:167-174.