Hello, PyFerret crashes on Mac OS X Sierra • System is Mac OS X 10.12.1 • PyFerret has been installed with conda (4.2.13_py27_0) conda create --name pyferret source activate pyferret conda install -c conda-forge pyferret conda install -c conda-forge pyferret-data No other package has been installed in this conda environnement PyFerret starts. I type PLOT I[I=1:10], and I see a pop-up saying "python. App has leaved in an unpredictable way". And no plot appears. Ferret hangs and I have to kill it. Anybody having the same problem ? Any idea to make it work ? Olivier marti@Spip-~ 👉 conda list # packages in environment at /Users/marti/anaconda/envs/pyferret: # anaconda-client 1.5.4 py27_0 cairo 1.12.18 8 conda-forge clyent 1.2.2 py27_0 curl 7.49.1 1 conda-forge ferret_datasets 7.0.0 py27_0 conda-forge fontconfig 2.11.1 3 conda-forge freetype 2.6.3 1 conda-forge gettext 0.19.7 1 conda-forge glib 2.48.0 4 conda-forge harfbuzz 1.0.6 0 conda-forge hdf4 4.2.12 0 conda-forge hdf5 1.8.17 7 conda-forge icu 56.1 4 conda-forge jpeg 9b 0 conda-forge libffi 3.2.1 2 conda-forge libgfortran 3.0.0 0 conda-forge libiconv 1.14 3 conda-forge libnetcdf 4.4.1 0 conda-forge libpng 1.6.26 0 conda-forge libxml2 2.9.4 3 conda-forge mkl 11.3.3 0 netcdf-fortran 4.4.4 1 conda-forge numpy 1.11.2 py27_0 openssl 1.0.2j 0 pango 1.40.1 0 conda-forge pcre 8.38 1 conda-forge pip 9.0.1 py27_0 pixman 0.32.6 0 conda-forge pyferret 7.0.1.dev py27_5 conda-forge pyqt 4.11.4 py27_1 conda-forge python 2.7.12 1 python-dateutil 2.6.0 py27_0 pytz 2016.7 py27_0 pyyaml 3.12 py27_0 qt 4.8.7 4 readline 6.2 2 requests 2.11.1 py27_0 setuptools 27.2.0 py27_0 sip 4.18 py27_0 conda-forge six 1.10.0 py27_0 sqlite 3.13.0 0 tk 8.5.18 0 wheel 0.29.0 py27_0 xz 5.2.2 0 conda-forge yaml 0.1.6 0 zlib 1.2.8 3 In /Users/marti/Libray/Logs/DiagnosticReports/python2.7_2016-11-24-094102_Spip.crash : Process: python2.7 [66552] Path: /Users/USER/*/python Identifier: python2.7 Version: ??? Code Type: X86-64 (Native) Parent Process: python2.7 [66544] Responsible: python2.7 [66552] User ID: 505 Date/Time: 2016-11-24 09:41:00.681 +0100 OS Version: Mac OS X 10.12.1 (16B2555) Report Version: 12 Anonymous UUID: F1CC9E63-0AA8-8858-7D16-6BA7C3A2308C Sleep/Wake UUID: D83402A2-18B9-44DF-B8F5-23A7D1E88BF8 Time Awake Since Boot: 100000 seconds Time Since Wake: 690 seconds System Integrity Protection: enabled Crashed Thread: 0 Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_INSTRUCTION (SIGILL) Exception Codes: 0x0000000000000001, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY Termination Signal: Illegal instruction: 4 Termination Reason: Namespace SIGNAL, Code 0x4 Terminating Process: exc handler [0] Application Specific Information: BUG IN CLIENT OF LIBDISPATCH: _dispatch_main_queue_callback_4CF called from the wrong thread crashed on child side of fork pre-exec Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 libdispatch.dylib 0x00007fffb9dced21 _dispatch_main_queue_callback_4CF + 1291 1 com.apple.CoreFoundation 0x00007fffa4d6bbe9 __CFRUNLOOP_IS_SERVICING_THE_MAIN_DISPATCH_QUEUE__ + 9 2 com.apple.CoreFoundation 0x00007fffa4d2d00d __CFRunLoopRun + 2205 3 com.apple.CoreFoundation 0x00007fffa4d2c514 CFRunLoopRunSpecific + 420 4 com.apple.HIToolbox 0x00007fffa42c9fbc RunCurrentEventLoopInMode + 240 5 com.apple.HIToolbox 0x00007fffa42c9df1 ReceiveNextEventCommon + 432 6 com.apple.HIToolbox 0x00007fffa42c9c26 _BlockUntilNextEventMatchingListInModeWithFilter + 71 7 com.apple.AppKit 0x00007fffa29b3b79 _DPSNextEvent + 1093 8 com.apple.AppKit 0x00007fffa30c91c3 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1637 9 com.apple.AppKit 0x00007fffa29a853d -[NSApplication run] + 926 10 libQtGui.4.8.7.dylib 0x00000001215cfa9f QEventDispatcherMac::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 951 11 libQtCore.4.8.7.dylib 0x0000000120a5c4a8 QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 394 12 libQtCore.4.8.7.dylib 0x0000000120a5f81b QCoreApplication::exec() + 175 13 QtGui.so 0x0000000120fdb360 meth_QApplication_exec_(_object*, _object*) + 80 14 libpython2.7.dylib 0x00000001000a3302 PyEval_EvalFrameEx + 3730 15 libpython2.7.dylib 0x00000001000ac913 fast_function + 179 16 libpython2.7.dylib 0x00000001000a338a PyEval_EvalFrameEx + 3866 17 libpython2.7.dylib 0x00000001000ac913 fast_function + 179 18 libpython2.7.dylib 0x00000001000a338a PyEval_EvalFrameEx + 3866 19 libpython2.7.dylib 0x00000001000ac7dc PyEval_EvalCodeEx + 2092 20 libpython2.7.dylib 0x0000000100035c1b function_call + 347 21 libpython2.7.dylib 0x000000010000c761 PyObject_Call + 97 22 libpython2.7.dylib 0x000000010001e7d7 instancemethod_call + 503 23 libpython2.7.dylib 0x000000010000c761 PyObject_Call + 97 24 libpython2.7.dylib 0x000000010006673a slot_tp_init + 106 25 libpython2.7.dylib 0x0000000100062465 type_call + 229 26 libpython2.7.dylib 0x000000010000c761 PyObject_Call + 97 27 libpython2.7.dylib 0x00000001000a35a5 PyEval_EvalFrameEx + 4405 28 libpython2.7.dylib 0x00000001000ac913 fast_function + 179 29 libpython2.7.dylib 0x00000001000a338a PyEval_EvalFrameEx + 3866 30 libpython2.7.dylib 0x00000001000ac7dc PyEval_EvalCodeEx + 2092 31 libpython2.7.dylib 0x0000000100035c1b function_call + 347 32 libpython2.7.dylib 0x000000010000c761 PyObject_Call + 97 33 libpython2.7.dylib 0x000000010001e7d7 instancemethod_call + 503 34 libpython2.7.dylib 0x000000010000c761 PyObject_Call + 97 35 libpython2.7.dylib 0x000000010006673a slot_tp_init + 106 36 libpython2.7.dylib 0x0000000100062465 type_call + 229 37 libpython2.7.dylib 0x000000010000c761 PyObject_Call + 97 38 libpython2.7.dylib 0x00000001000a35a5 PyEval_EvalFrameEx + 4405 39 libpython2.7.dylib 0x00000001000ac913 fast_function + 179 40 libpython2.7.dylib 0x00000001000a338a PyEval_EvalFrameEx + 3866 41 libpython2.7.dylib 0x00000001000ac913 fast_function + 179 42 libpython2.7.dylib 0x00000001000a338a PyEval_EvalFrameEx + 3866 43 libpython2.7.dylib 0x00000001000ac7dc PyEval_EvalCodeEx + 2092 44 libpython2.7.dylib 0x0000000100035c1b function_call + 347 45 libpython2.7.dylib 0x000000010000c761 PyObject_Call + 97 46 libpython2.7.dylib 0x000000010000cf42 call_function_tail + 98 47 libpython2.7.dylib 0x000000010000d2aa PyObject_CallMethod + 282 48 libpyferret.so 0x0000000104058608 grdelWindowCreate + 349 49 libpyferret.so 0x000000010405a1ad fgdwincreate_ + 39 50 libpyferret.so 0x000000010405dbff fgd_gopwk_ + 259 51 libpyferret.so 0x0000000104191489 open_gks_ws_ + 1232 52 libpyferret.so 0x00000001041939c1 set_gks_metafile_ + 570 53 libpyferret.so 0x0000000103e0e3c4 pltype_ + 276 54 libpyferret.so 0x00000001040af2df pplcmd_f_ + 4011 55 libpyferret.so 0x0000000104182277 pplcmd_c_ + 19 56 libpyferret.so 0x00000001040adb51 pplcmd_ + 339 57 libpyferret.so 0x0000000103fd1cf9 send_pltype_ + 433 58 libpyferret.so 0x0000000103fd88ad start_pplus_ + 436 59 libpyferret.so 0x00000001041d932e xeq_plot_ + 46 60 libpyferret.so 0x0000000103df36e0 ferret_dispatch_ + 528 61 libpyferret.so 0x0000000103e003e1 ferret_dispatch_c + 50 62 libpyferret.so 0x0000000103de8137 pyferretRunCommand + 253 63 libpython2.7.dylib 0x00000001000a3302 PyEval_EvalFrameEx + 3730 64 libpython2.7.dylib 0x00000001000ac7dc PyEval_EvalCodeEx + 2092 65 libpython2.7.dylib 0x00000001000ac988 fast_function + 296 66 libpython2.7.dylib 0x00000001000a338a PyEval_EvalFrameEx + 3866 67 libpython2.7.dylib 0x00000001000ac7dc PyEval_EvalCodeEx + 2092 68 libpython2.7.dylib 0x00000001000ac988 fast_function + 296 69 libpython2.7.dylib 0x00000001000a338a PyEval_EvalFrameEx + 3866 70 libpython2.7.dylib 0x00000001000ac7dc PyEval_EvalCodeEx + 2092 71 libpython2.7.dylib 0x00000001000ac856 PyEval_EvalCode + 54 72 libpython2.7.dylib 0x00000001000cb4e9 PyRun_StringFlags + 121 73 libpython2.7.dylib 0x00000001000cc513 PyRun_SimpleStringFlags + 67 74 libpython2.7.dylib 0x00000001000dfe9b Py_Main + 2123 75 python 0x0000000100000f14 start + 52 Thread 1: 0 libsystem_kernel.dylib 0x00007fffb9f264e6 __workq_kernreturn + 10 1 libsystem_pthread.dylib 0x00007fffba00e7b5 _pthread_wqthread + 1426 2 libsystem_pthread.dylib 0x00007fffba00e211 start_wqthread + 13 Thread 2: 0 libsystem_kernel.dylib 0x00007fffb9f264e6 __workq_kernreturn + 10 1 libsystem_pthread.dylib 0x00007fffba00e622 _pthread_wqthread + 1023 2 libsystem_pthread.dylib 0x00007fffba00e211 start_wqthread + 13 Thread 3: 0 libsystem_kernel.dylib 0x00007fffb9f264e6 __workq_kernreturn + 10 1 libsystem_pthread.dylib 0x00007fffba00e622 _pthread_wqthread + 1023 2 libsystem_pthread.dylib 0x00007fffba00e211 start_wqthread + 13 Thread 4:: Dispatch queue: NSCGSDisableUpdates 0 libsystem_kernel.dylib 0x00007fffb9f1e41a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fffb9f1d867 mach_msg + 55 2 com.apple.SkyLight 0x00007fffb61c3c2c _CGSReenableUpdateForConnectionSync + 99 3 com.apple.SkyLight 0x00007fffb613d9d8 CGSUpdateManager::enable_update(unsigned long long) + 532 4 libdispatch.dylib 0x00007fffb9dc9f5f _dispatch_call_block_and_release + 12 5 libdispatch.dylib 0x00007fffb9dc1128 _dispatch_client_callout + 8 6 libdispatch.dylib 0x00007fffb9dd7b97 _dispatch_queue_serial_drain + 896 7 libdispatch.dylib 0x00007fffb9dc9d41 _dispatch_queue_invoke + 1046 8 libdispatch.dylib 0x00007fffb9dd0158 _dispatch_queue_override_invoke + 369 9 libdispatch.dylib 0x00007fffb9dc2ee0 _dispatch_root_queue_drain + 476 10 libdispatch.dylib 0x00007fffb9dc2cb7 _dispatch_worker_thread3 + 99 11 libsystem_pthread.dylib 0x00007fffba00e736 _pthread_wqthread + 1299 12 libsystem_pthread.dylib 0x00007fffba00e211 start_wqthread + 13 Thread 5:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fffb9f1e41a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fffb9f1d867 mach_msg + 55 2 com.apple.CoreFoundation 0x00007fffa4d2d834 __CFRunLoopServiceMachPort + 212 3 com.apple.CoreFoundation 0x00007fffa4d2ccc1 __CFRunLoopRun + 1361 4 com.apple.CoreFoundation 0x00007fffa4d2c514 CFRunLoopRunSpecific + 420 5 com.apple.AppKit 0x00007fffa2b005a0 _NSEventThread + 205 6 libsystem_pthread.dylib 0x00007fffba00eaab _pthread_body + 180 7 libsystem_pthread.dylib 0x00007fffba00e9f7 _pthread_start + 286 8 libsystem_pthread.dylib 0x00007fffba00e221 thread_start + 13 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000307 rbx: 0x000000012046c400 rcx: 0x00007fffb9dea530 rdx: 0x0000000000000307 rdi: 0x0000000000000001 rsi: 0x0000000000000006 rbp: 0x00007fff5fbf4410 rsp: 0x00007fff5fbf43a0 r8: 0x0000000000000040 r9: 0x000000012046c418 r10: 0xffffffffffffffff r11: 0x0000000000012068 r12: 0x000000012046c3f0 r13: 0x000000012046c530 r14: 0x00007fffc2ae6a80 r15: 0x0000000101140818 rip: 0x00007fffb9dced21 rfl: 0x0000000000010202 cr2: 0x00000001215d1e16 Logical CPU: 1 Error Code: 0x00000000 Trap Number: 6 Binary Images: 0x100000000 - 0x100000ff7 +python (???) <BD6512B6-E6EA-37A5-B1BF-6E8D9E38BE51> /Users/USER/*/python 0x100003000 - 0x100146ff7 +libpython2.7.dylib (2.7) 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<B8C3701D-5A91-3D35-999D-2DC8D5393525> /usr/lib/system/libsystem_blocks.dylib 0x7fffb9e2c000 - 0x7fffb9eb9fef libsystem_c.dylib (1158.20.4) <5F9531F5-EDA3-3D25-A827-3E0FD6B392BA> /usr/lib/system/libsystem_c.dylib 0x7fffb9eba000 - 0x7fffb9ebdffb libsystem_configuration.dylib (888.20.5) <CDC55FCB-C1FC-350D-A919-5DBCFC835B63> /usr/lib/system/libsystem_configuration.dylib 0x7fffb9ebe000 - 0x7fffb9ec1fff libsystem_coreservices.dylib (41.2) <5DE691C6-7EE6-3210-895D-9EA3ECBC09B4> /usr/lib/system/libsystem_coreservices.dylib 0x7fffb9ec2000 - 0x7fffb9edaffb libsystem_coretls.dylib (121.1.1) <8F7E9B12-400D-3276-A9C5-4546B0258554> /usr/lib/system/libsystem_coretls.dylib 0x7fffb9edb000 - 0x7fffb9ee1fff libsystem_dnssd.dylib (765.20.4) <28E52C39-DF10-340F-A3EC-C0119AF6361F> /usr/lib/system/libsystem_dnssd.dylib 0x7fffb9ee2000 - 0x7fffb9f0bfff libsystem_info.dylib (503) <C686B834-5E7D-382C-AF6E-44AB78EE83E2> /usr/lib/system/libsystem_info.dylib 0x7fffb9f0c000 - 0x7fffb9f2eff7 libsystem_kernel.dylib (3789.21.3) <EC53F92A-0DFA-3027-A220-414A01F17B2E> /usr/lib/system/libsystem_kernel.dylib 0x7fffb9f2f000 - 0x7fffb9f76fe7 libsystem_m.dylib (3121.4) <7F86C291-B105-31C1-9923-90EBAB22B73F> /usr/lib/system/libsystem_m.dylib 0x7fffb9f77000 - 0x7fffb9f95ff7 libsystem_malloc.dylib (116) <F9840080-4C2C-3F3B-8087-7C738F12A1C7> /usr/lib/system/libsystem_malloc.dylib 0x7fffb9f96000 - 0x7fffb9fedff3 libsystem_network.dylib (856.20.4) <2BAFB24F-999C-3148-BDD8-F28E05F716F7> /usr/lib/system/libsystem_network.dylib 0x7fffb9fee000 - 0x7fffb9ff7ff3 libsystem_networkextension.dylib (563.20.3) <971DD3AD-D17A-32FF-95DE-0A5A979E68AE> /usr/lib/system/libsystem_networkextension.dylib 0x7fffb9ff8000 - 0x7fffba001ff3 libsystem_notify.dylib (165.20.1) <EAD023A2-AD3F-31C8-9489-274B9A42DA61> /usr/lib/system/libsystem_notify.dylib 0x7fffba002000 - 0x7fffba00afe7 libsystem_platform.dylib (126.1.2) <2F2D6A81-C36C-353D-B27B-A6643A32375E> /usr/lib/system/libsystem_platform.dylib 0x7fffba00b000 - 0x7fffba015ff7 libsystem_pthread.dylib (218.20.1) <46375095-4731-3034-9D87-396DE95FC697> /usr/lib/system/libsystem_pthread.dylib 0x7fffba016000 - 0x7fffba019ff7 libsystem_sandbox.dylib (592.21.2) <2D42A2BF-A7AF-352A-A821-D8F6E85A63AC> /usr/lib/system/libsystem_sandbox.dylib 0x7fffba01a000 - 0x7fffba01bfff libsystem_secinit.dylib (24) <A54B8FEF-E792-3C54-8E0B-E80A376662F2> /usr/lib/system/libsystem_secinit.dylib 0x7fffba01c000 - 0x7fffba023fff libsystem_symptoms.dylib (532.1.1) <8FB7CA37-79EF-3651-B5B9-B5E1E0947067> /usr/lib/system/libsystem_symptoms.dylib 0x7fffba024000 - 0x7fffba044ff7 libsystem_trace.dylib (518.20.8) <C029B910-A65F-35F6-B194-B933B454EAB4> /usr/lib/system/libsystem_trace.dylib 0x7fffba045000 - 0x7fffba04affb libunwind.dylib (35.3) <9F7C2AD8-A9A7-3DE4-828D-B0F0F166AAA0> /usr/lib/system/libunwind.dylib 0x7fffba04b000 - 0x7fffba074ff7 libxpc.dylib (972.20.3) <85EB25FD-218F-38EE-9E69-391CC8EBE6C5> /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 60990 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=404.5M resident=0K(0%) swapped_out_or_unallocated=404.5M(100%) Writable regions: Total=390.7M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=390.7M(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 384K 2 Activity Tracing 256K 2 CG backing stores 1404K 2 CG image 4K 2 CoreUI image data 496K 5 CoreUI image file 144K 3 Dispatch continuations 8192K 2 Kernel Alloc Once 8K 2 MALLOC 75.5M 60 MALLOC guard page 48K 11 MALLOC_LARGE (reserved) 192.6M 2 reserved VM address space (unallocated) Memory Tag 242 12K 2 Memory Tag 251 13.3M 707 STACK GUARD 56.0M 7 Stack 10.5M 7 VM_ALLOCATE 8180K 727 __DATA 165.7M 327 __IMAGE 528K 2 __LINKEDIT 133.9M 86 __TEXT 270.6M 310 __UNICODE 556K 2 mapped file 49.4M 39 shared memory 16.3M 14 =========== ======= ======= TOTAL 1.0G 2300 TOTAL, minus reserved VM space 811.1M 2300 -- Laboratoire des Sciences du Climat et de l'Environnement Institut Pierre Simon Laplace Laboratoire CEA-CNRS-UVSQ - UMR 8212 Tel : +33 1 69 08 77 27 - Mob : +33 6 45 36 43 74 Fax : +33 1 69 08 30 73 |